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Books and Special Volumes
Contributions to Proceedings and Special Volumes
Winter, C., M.-E. Kerros, M. G. Weinbauer. 2009. Seasonal and depth-related dynamics of prokaryotes and viruses in surface and deep waters of the northwestern Mediterranean Sea. Deep Sea Research Part I: Oceanographic Research Papers 56, 1972-1982.
Amaro, T., H. Witte, G.J. Herndl, M.R. Cunha, D.S.M. Billett, 2009: Deep-sea bacterial communities in sediments and guts of deposit-feeding holothurians in Portuguese canyons (NE Atlantic). Deep Sea Res. I, 56: 1834-1843
Baltar, F., J. Aristegui, E. Sintes, H.M. van Aken, J.M. Gasol, G.J. Herndl, 2009: Prokaryotic extracellular enzymatic activity in relation to biomass production and respiration in the meso- and bathypelagic waters of the (sub)tropical Atlantic. Environ. Microbiol., 11: 1998-2014
Zhang, Y., E. Sintes, J. Chen, Y. Zhang, M. Dai, N. Jiao, G.J. Herndl, 2009: Role of mesoscale cyclonic eddies in the distribution and activity of Archaea and Bacteria in the South China Sea. Aquat. Microb. Ecol., 56: 65-79
Bonilla-Findji, O., G.J. Herndl, J.-P. Gattuso, M.G. Weinbauer, 2009: Viral and flagellate control of prokaryotic production and community structure in offshore Mediterranean waters. Appl. Environ. Microbiol., 75: 4801-4812
Aristegui, J., J.M. Gasol, C.M. Duarte, G.J. Herndl, 2009: Microbial oceanography of the dark ocean’s pelagic realm. Limnol. Oceanogr. 54: 1501-1529
Calleja, M.Ll., C.M. Duarte, Y. Prairie, S. Agusti, G.J. Herndl, 2009: Evidence for surface organic matter modulation of air-sea CO2 gas exchange. Biogeosciences, 6: 1105-1114
Wilhartitz, I., A.K.T. Kirschner, H. Stadler, G.J. Herndl, M. Dietzel, C. Latal, R.L. Mach, A.H. Farnleitner, 2009: Heterotrophic prokaryotic production in ultraoligotrophic alpine karst aquifers and ecological implications. FEMS Microb. Ecol., 68: 287-299
Herfort, L., J.-H. Kim, M.J.L. Coolen, B. Abbas, S. Schouten, G.J. Herndl, J.S. Sinninghe Damsté, 2009: Diversity of Archaea and detection of crenarchaeotal amoA genes in the rivers Rhine and Tét. Aquat. Microb. Ecol. 55: 189-201
Weinbauer, M.G., J.M. Arrieta., C. Griebler, G. J. Herndl, 2009, Enhanced viral production and infection of bacterioplankton during an iron-induced phytoplankton bloom in the Southern Ocean. Limnol. Oceanogr., 54: 774-784
Winter C., M.-E. Kerros, M.G. Weinbauer, 2009. Seasonal changes of bacterial and archaeal communities in the dark ocean: Evidence from the Mediterranean Sea. Limnol. Oceanogr., 54: 160-170
Baltar, F., J. Aristegui, J.M. Gasol, E. Sintes, G.J. Herndl, 2009: Evidence for dependence of prokaryotic metabolism on suspended particulate organic matter in the dark waters of the subtropical North Atlantic. Limnol. Oceanogr., 54: 182-193
De Corte, D., T. Yokokawa, M.M. Varela, H. Agogué, G.J. Herndl, 2009: Spatial distribution of Bacteria and Archaea and amoA gene copy numbers throughout the water column of the eastern Mediterranean Sea. ISME Journal., 3: 147-158
Grote, J., G. Jost, M. Labrenz, G.J. Herndl, K. Jürgens, 2008: Epsilonproteobacteria represent the major portion of chemoautotrophic bacteria in sulfidic waters of pelagic redoxclines of the Baltic and Black Seas. Appl. Environ. Microbiol. 74: 7546-7551
Agogué, H., M. Brink, J. Dinasquet, G.J. Herndl, 2008: Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic. Nature, 456: 788-791
Gasol, J.M., J. Pinhassi, L. Alonso-Sáez, H. Ducklow, G.J. Herndl, M. Koblizek, M. Labrenz, Y. Luo, X.A.G. Moran, T. Reinthaler, M. Simon, 2008: Towards a better understanding of the microbial carbon flux in the sea. Aquat. Microb. Ecol., 53: 21-38
Herndl, G.J., H. Agogué, F. Baltar, T. Reinthaler, E. Sintes, M.M. Varela, 2008: Regulation of aquatic microbial processes: the ‘microbial loop of the sunlit surface waters and the dark ocean dissected. Aquat. Microb. Ecol., 53: 59-68
Parada, V., A.-C. Baudoux, E. Sintes, M.G. Weinbauer, G.J. Herndl, 2008: Dynamics and diversity of newly produced virioplankton in the North Sea. The ISME Journal, 2: 924-936
Winter, C., M.M. Moeseneder, G.J. Herndl, M.G. Weinbauer, 2008: Relationship of geographic distance, depth, temperature, and viruses with prokaryotic communities in the eastern tropical Atlantic Ocean. Microb. Ecol., 56: 383-389
Varela, M.M., H.M. van Aken, G.J. Herndl, 2008: Abundance and activity of Chloroflexi-type SAR202 bacterioplankton in the meso- and bathypelagic waters of the (sub)tropical Atlantic. Environ. Microbiol., 10: 1903-1911
Reinthaler, T., E. Sintes, G.J. Herndl, 2008: Dissolved organic matter and bacterial production and respiration in the sea-surface microlayer of the open Atlantic and the western Mediterranean Sea. Limnol. Oceanogr., 53: 122-136
Varela, M.M., H.M. van Aken, E. Sintes, G.J. Herndl, 2008: Latitudinal trends of Crenarchaeota and Bacteria in the meso- and bathypelagic water masses of the North Atlantic. Environ. Microbiol., 10: 110-124
Baltar, F., J. Aristegui, J.M. Gasol, S. Hernandez-Leon, G.J. Herndl, 2007: Strong coast – ocean and surface – depth gradients in prokaryotic assemblage structure and activity in a coastal transition zone region. Aquat. Microb. Ecol., 50: 63-74
Herfort, L., S. Schouten, B. Abbas, M.J.W. Veldhuis, M.J.L. Coolen, C. Wuchter, J.P. Boon, G.J. Herndl, J.S. Sinninghe Damsté, 2007: Variations in spatial and temporal distribution of Archaea in the North Sea in relation to environmental variables. FEMS Microb. Ecol., 62: 242-257
Stoica, E., G.J. Herndl, 2007: Bacterioplankton community composition in nearshore waters of the NW Black Sea coast during consecutive diatom and coccolithophorid blooms. Aquat. Sci., 69: 413-418
Wilhartitz, I., R. Mach, E. Teira, T. Reinthaler, G.J. Herndl, A. Farnleitner, 2007: Prokaryotic community analysis with CARD-FISH in comparison to FISH in ultra-oligotrophic ground- and drinking water. J. Appl. Microbiol., 103: 871-881
Stoica, E., G.J. Herndl, 2007: Contribution of Crenarchaeota and Euryarchaeota to the prokaryotic plankton in the coastal northwestern Black Sea. J. Plankton Res., 29: 699-706
Parada, V., E. Sintes, H.M. van Aken, M.G. Weinbauer, G.J. Herndl, 2007: Viral abundance, decay and diversity in the meso- and bathypelagic waters of the North Atlantic. Appl. Environ. Microbiol., 73: 4429-4438
Arrieta, J.M., M.G. Weinbauer, G.J. Herndl, 2007: Response to “Interpreting the results of oceanic mesoscale enrichment experiments: caveats and lessons from limnology and coastal ecology” by M.S. Hale and R.B. Rivkin. Limnol. Oceanogr., 52: 916-918
Alderkamp, A.-C., E. Sintes, G.J. Herndl, 2006: Abundance and activity of major groups of prokaryotic plankton in the coastal North Sea during spring and summer. Aquat. Microb. Ecol., 45: 237-246
Reinthaler, T., K. Bakker, R. Manuels, J. v. Ooijen, G.J. Herndl, 2006: Fully automated spectrophotometric approach to determine oxygen concentrations in seawater via continuous-flow analysis. Limnol. Oceanogr.:Methods, 4: 358-366
Sintes, E., G.J. Herndl, 2006: Quantifying substrate uptake of individual cells of marine bacterioplankton by catalyzed reporter deposition fluorescence in situ hybridization combined with microautoradiography. Appl. Environ. Microbiol., 72: 7022-7028
Teira, E., P. Lebaron, H. v. Aken, G.J. Herndl, 2006: Distribution and activity of Bacteria and Archaea in the deep water masses of the North Atlantic. Limnol. Oceanogr., 51: 2131-2144
Wuchter, C., B. Abbas, M.J.L. Coolen, L. Herfort, J. van Bleijswijk, P. Timmers, M. Strous, E. Teira, G.J. Herndl, J.J. Middelburg, S. Schouten, J.S. Sinninghe Damsté, 2006: Archaeal nitrification in the ocean. Proc. Natl. Acad. Sci.USA , 103: 12317-12322
Sogin, M.L., H.G. Morrison, J.A. Huber, D.M. Welch, S.M. Huse, J.M. Arrieta, G.J. Herndl, 2006: Microbial diversity in the deep sea and the under-explored “rare biosphere”. Proc. Natl. Acad. Sci. USA, 103: 12115-12120
Reinthaler, T., H. van Aken, C. Veth, P. leB Williams, J. Aristegui, C. Robinson, P. Lebaron, G.J. Herndl, 2006: Prokaryotic respiration and production in the meso- and bathypelagic realm of the eastern and western North Atlantic basin. Limnol. Oceanogr., 51: 1262-1273
Parada, V., G.J. Herndl, M.G. Weinbauer, 2006: Viral burst size of heterotrophic prokaryotes in aquatic systems. J. Mar. Biol. Ass. UK, 86: 613-621
Joux, F., H. Agogue, I. Obernosterer, C. Dupuy, T. Reinthaler, G.J. Herndl, P. Lebaron, 2006: Microbial community structure in the sea surface microlayer at two contrasting sites in the Northwestern Mediterranean Sea. Aquat. Microb. Ecol., 42: 91-104
Teira, E., H. v. Aken, C. Veth, G.J. Herndl, 2006: Archaeal uptake of enantiomeric amino acids in the meso- and bathypelagic waters of the North Atlantic. Limnol. Oceanogr., 51: 60-69
Dachs, J., M.L. Calleja, C.M. Duarte, S. de Vento, B. Turpin, A. Polidori, G.J. Herndl, S. Agusti, 2005: High atmosphere-ocean exchange of organic carbon in the NE subtropical Atlantic. Geophys. Res. Lett., 32, L21807
Agogue, H., E. Casamayor, M. Bourrain, I. Obernosterer, F. Joux, G.J. Herndl, P. Lebaron, 2005: A survey on bacteria inhabiting the sea surface microlayer of coastal ecosystems. FEMS Microb. Ecol., 54: 269-280
Stoderegger, K.E., G.J. Herndl, 2005: Dynamics in bacterial surface properties of a natural bacterial community in the coastal North Sea during a spring phytoplankton bloom. FEMS Microb. Ecol., 53: 285-294
Farnleitner, A.H., I. Wilhartitz, G. Ryzinska, A.K.T. Kirschner, H. Stadler, M.M. Burtscher, R. Hornek, U. Szewzyk, G.J. Herndl, R.L. Mach, 2005: Bacterial dynamics in spring water of alpine karst aquifers indicates the presence of stable autochthonous microbial endokarst communities. Environ. Microbiol., 7: 1248-1259
Obernosterer, I., P. Catala, T. Reinthaler, G.J. Herndl, P. Lebaron, 2005: Enhanced heterotrophic activity in the surface microlayer of the Mediterranean Sea. Aquat. Microb. Ecol., 39: 293-302
Pirker, H., C. Pausz, K.E. Stoderegger, G.J. Herndl, 2005: Simultaneous measurement of metabolic activity and membrane integrity in marine bacterioplankton determined by confocal laser-scanning microscopy. Aquat. Microb. Ecol., 39: 225-233
Winter, C., A. Smit, T. Szöke-Dénes, G.J. Herndl, M.G. Weinbauer, 2005: Modelling viral impact on bacterioplankton in the North Sea using artificial neural networks. Environ. Microbiol., 7: 881-893
Herndl, G.J., T. Reinthaler, E. Teira, H. van Aken, C. Veth, A. Pernthaler, J. Pernthaler, 2005: Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean. Appl. Environ. Microbiol., 71: 2303-2309
Reinthaler, T., C. Winter, G.J. Herndl, 2005: Relation between bacterioplankton richness, respiration, and production in the southern North Sea. Appl. Environ. Microbiol., 71: 2260-2266
Reinthaler, T., G.J. Herndl, 2005: Seasonal dynamics of bacterial growth efficiencies in relation to phytoplankton in the Southern North Sea. Aquat. Microb. Ecol., 39: 7-16
Winter, C., A. Smit, G.J. Herndl, M.G. Weinbauer, 2005: Linking prokaryotic richness with viral abundance and prokaryotic activity. Limnol. Oceanogr., 50: 968-977
Moeseneder, M.M., J.M. Arrieta, G.J. Herndl, 2005: A comparison of DNA- and RNA-based clone libraries from the same marine bacterioplankton community. FEMS Microb. Ecol., 51: 341-352
Besemer, K., M.M. Moeseneder, J.M. Arrieta, G.J. Herndl, P. Peduzzi, 2005: Complexity of bacterial communities in a river-floodplain system (Danube, Austria). Appl. Environ. Microbiol., 71: 609-620
Kramer, G.D., C. Pausz, G.J. Herndl, 2005: Elemental composition of dissolved organic matter and bacterioplankton production in the Faroe-Shetland Channel of the North Atlantic. Deep Sea Res. I, 52: 85-97
Kramer, G.D., G.J. Herndl, 2004: Photo- and bioreactivity of chromophoric dissolved organic matter produced by marine bacterioplankton. Aquat. Microb. Ecol., 36: 239-246
Agogue, H., E. Casamayor, F. Joux, I. Obernosterer, C. Dupuy, F. Lantoine, P. Catala, M.G. Weinbauer, T. Reinthaler, G.J. Herndl, P. Lebaron, 2004: Comparison of samplers for the biological characterization of the sea surface microlayer. Limnol. Oceanogr.: Methods, 2: 213-225
Teira, E., T. Reinthaler, A. Pernthaler, J. Pernthaler, G.J. Herndl, 2004: Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by Bacteria and Archaea in the deep ocean. Appl. Environ. Microbiol., 70: 4411-4414
Stoderegger, K.E., G.J. Herndl, 2004: Dynamics in bacterial cell surface charge assessed by fluorescence stains and confocal laser scanning microscopy. Aquat. Microb. Ecol., 36: 29-40
Winter, C., G.J. Herndl, M.G. Weinbauer, 2004: Diel cycles in viral infection of bacterioplankton in the North Sea. Aquat. Microb. Ecol., 35: 207-216
Arrieta, J.M., M.G. Weinbauer, C. Lute, G.J. Herndl, 2004: Rapid response of bacterioplankton to iron fertilization in the Southern Ocean. Limnol. Oceanogr., 49: 799-808
Winter, C., A. Smit, G.J. Herndl, M.G. Weinbauer, 2004: Impact of virioplankton on archaeal and bacterial community richness assessed in seawater batch cultures. Appl. Environ. Microbiol., 70: 804-813
Muia, W.A., G. Bretschko, G.J. Herndl, 2003: A study of biofilm in a second order tropical stream, Njoro River, Kenya: first results. Internat. Rev. Hydrobiol., 88: 372-384
Hein, T., C. Baranyi, G.J. Herndl, P. Riedler W. Wanek, F. Schiemer, 2003: Allochthonous and autochthonous particulate organic matter in floodplains of the River Danube: the importance of hydrological connectivity. Freshwater Biol., 48: 220-232
Perez, M.T., C. Pausz, G.J. Herndl, 2003: Major shift in bacterioplankton utilization of enantiomeric amino acids between surface waters and the ocean’s interior. Limnol. Oceanogr., 48: 755-763
Slezak, D, G.J. Herndl, 2003: Role of UV-radiation on the cell content and concentration of dimethylsulfoniopropionate in Emiliania huxleyi (Strain L). Mar. Ecol. Prog. Ser., 246: 61-71
Stoderegger, K.E., G.J. Herndl, 2002: Distribution of capsulated bacterioplankton in the North Atlantic and the North Sea. Microb. Ecol., 44: 154-163
Pausz, C., G.J. Herndl, 2002: Role of nitrogen versus phosphorus availability on the effect of UV radiation on bacterioplankton and their recovery from previous UV stress. Aquat. Microb. Ecol., 29: 89-95
Arrieta, J.M., G.J. Herndl, 2002: Changes in bacterial B-glucosidase diversity during a coastal phytoplankton bloom. Limnol. Oceanogr., 47: 594-599
Reitner, B., A. Herzig, G.J. Herndl, 2002: Photoreactivity and bacterioplankton availability of aliphatic versus aromatic amino acids and a protein. Aquat. Microb. Ecol., 26: 305-311
Stoderegger, K.E., G.J. Herndl, 2001: Visualization of the exopolysaccharide bacterial capsule and its distribution in oceanic environments. Aquat. Microb. Ecol., 26: 195-199
Arrieta, J.M., G.J. Herndl, 2001: Assessing the diversity of marine bacterial ?-glucosidase by capillary electrophoresis zymography. Appl. Environ. Microbiol., 67: 4896-4900
Slezak, D., A. Brugger, G.J. Herndl, 2001: Impact of solar radiation on the biological removal of dimethylsulfoniopropionate and dimethylsulfide in marine surface waters. Aquat. Microb. Ecol., 25: 87-97
Brugger, A., B. Reitner, I. Kolar, N. Querec, G.J. Herndl, 2001: Seasonal and spatial distribution of dissolved and particulate organic carbon and bacteria in a bank of an oligotrophic river, the Enns River, Austria. Freshwater Biol., 46: 997-1016
Brugger, A., B. Wett, I. Kolar, B. Reitner, G.J. Herndl, 2001: Immobilization and bacterial utilization of dissolved organic carbon entering the riparian zone of the alpine Enns River, Austria. Aquat. Microb. Ecol. 24: 129-142
Obernosterer, I. P. Ruardij, G.J. Herndl, 2001: Spatial and diurnal dynamics of dissolved organic matter (DOM) fluorescence and H2O2 and the photochemical oxygen demand of surface water DOM across the subtropical Atlantic Ocean. Limnol. Oceanogr., 46: 632-643
Obernosterer, I., R. Sempéré, G.J. Herndl, 2001: Ultraviolet radiation induces a reversal of the bioavailability of DOM to marine bacterioplankton. Aquat. Microb. Ecol., 24: 61-68
Moeseneder, M.M., C. Winter, J.M. Arrieta, G.J. Herndl, 2001: Terminal-restriction fragment length polymorphism (T-RFLP) screening of a marine archaeal clone library to determine the different phylotypes. J. Microbiol. Meth., 44: 159-172
Winter, C., M.M. Moeseneder, G.J. Herndl, 2001: Impact of UV radiation on bacterioplankton community composition. Appl. Environ. Microbiol., 67: 665-672
Moeseneder, M.M., C. Winter, G.J. Herndl, 2001: Horizontal and vertical complexity of attached and free-living Bacteria of the eastern Mediterranean Sea determined by 16S rDNA and 16S rRNA fingerprints. Limnol. Oceanogr., 46: 95-107
Obernosterer, I., G.J. Herndl, 2000: Differences in the optical and biological reactivity of humic and non-humic DOC in two contrasting coastal marine environments. Limnol. Oceanogr., 45: 1120-1129
Kuipers, B., G.J. van Noort, J.H. Vosjan, G.J. Herndl, 2000: Diel periodicity of bacterioplankton in the euphotic zone of the subtropical Atlantic Ocean. Mar. Ecol. Prog. Ser., 201: 13-25
Panzenböck, M., B. Möbes-Hansen, R. Albert, G.J. Herndl, 2000: Dynamics of phyto- and bacterioplankton in a high Arctic lake on Franz-Joseph-Land archipelago. Aquat. Microb. Ecol., 21: 265-273
Arrieta, J.M., M.G. Weinbauer, G.J. Herndl, 2000: Interspecific differences in sensitivity to UV radiation and subsequent recovery in selected isolates of marine bacteria. Appl. Environ. Microbiol., 66: 1468-1473
Obernosterer, I., G. Kraay, E. de Ranitz, G.J. Herndl, 1999: Dynamics of low molecular weight carboxylic acids and carbonyl compounds in the Aegean Sea (Eastern Mediterranean) and the turnover of pyruvate. Aquat. Microb. Ecol., 20: 147-156
Stoderegger, K.E., G.J. Herndl, 1999: Production of exopolymer particles by marine bacterioplankton under contrasting turbulence conditions. Mar. Ecol. Prog. Ser., 189: 9-16
Obernosterer, I., B. Reitner, G.J. Herndl, 1999: Contrasting effects of solar radiation on dissolved organic matter and its bioavailability to marine bacterioplankton. Limnol. Oceanogr., 44: 1645-1654 Abstract (opens new window)
Reitner, B., A. Herzig, G.J. Herndl, 1999: Dynamics in bacterioplankton production in a shallow, temperate lake (Lake Neusiedl, Austria): evidence for dependence on macrophyte production rather than on phytoplankton. Aquat. Microb. Ecol., 19: 245-254
Moeseneder, M.M., J.M. Arrieta, G. Muyzer, C. Winter, G.J. Herndl, 1999: Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis. Appl. Environ. Microbiol., 65: 3518-3525 Reprint Version (Acrobat Reader PDF - 448k)
Pausz, C., G.J. Herndl, 1999: Role of ultraviolet radiation on phytoplankton extracellular release and its subsequent utilization by marine bacterioplankton. Aquat. Microb. Ecol., 18: 85-93
Unanue, M., B. Ayo, M. Agis, D. Slezak, G.J. Herndl, J. Iriberri, 1999: Ectoenzymatic activity and uptake of monomers in marine bacterioplankton described by a biphasic kinetic model. Microb. Ecol., 37: 36-48
Stoderegger, K., G.J. Herndl, 1998: Production and release of bacterial capsular material and its subsequent utilization by marine bacterioplankton. Limnol. Oceanogr., 43: 877-884
Unanue, M.A., I. Azua, J.M. Arrieta, G.J. Herndl, J. Iriberri, 1998: Laboratory made particles as a useful approach to analyse microbial processes in marine macroaggregates. FEMS Microbiol. Ecol., 26: 325-334
Agis, M. M. Unanue, J. Iriberri, G.J. Herndl, 1998: Bacterial colonization and ectoenzymatic activity in artificial marine snow. Part II: Cleavage and uptake of carbohydrates. Microb. Ecol., 36: 66-74 Reprint Version (Acrobat Reader PDF - 196k)
Schuster, S., J.M. Arrieta, G.J. Herndl, 1998: Adsorption of dissolved free amino acids on colloidal DOM enhances colloidal DOM utilization but reduces amino acid uptake by orders of magnitude in marine bacterioplankton. Mar. Ecol. Prog. Ser., 166: 99-108
Brugger, A, D. Slezak, I. Obernosterer, G.J. Herndl, 1998: Photolysis of dimethyl sulfide in the northern Adriatic Sea: Dependence on substrate concentration, irradiance and DOC concentration. Mar. Chem., 59: 321-331
Rath, J., K.Y. Wu, G.J. Herndl, E.F. DeLong, 1998: High phylogenetic diversity in a marine snow-associated bacterial assemblage. Aquat. Microb. Ecol., 14: 261-269
Reitner, B., A. Herzig, G.J. Herndl, 1997: Microbial activity under the ice cover of a shallow lake. Hydrobiologia, 357: 173-184
Sommaruga, R., I. Obernosterer, G.J. Herndl, R. Psenner, 1997: Inhibitory effect of solar radiation on thymidine and leucine incorporation by freshwater and marine bacterioplankton. Appl. Environ. Microbiol., 63: 4178-4184 Reprint Version (Acrobat Reader PDF - 173k)
Kaiser, E., G.J. Herndl, 1997: Rapid recovery of marine bacterioplankton activity after inhibition by UV radiation. Appl. Environ. Microbiol., 63: 4026-4031 Reprint Version (Acrobat Reader PDF - 183k)
Hoch, B.M., B. Berger, G. Kavka, G.J. Herndl, 1997: Concentration of suspended matter and the bacterioplankton community in the Danube River (in German). Wasser- und Abfallwirtschaft, 49: 57-63
Reitner, B., A. Herzig, G.J. Herndl, 1997: Role of ultraviolet-B radiation on photochemical and microbial oxygen consumption in a humic-rich shallow lake. Limnol. Oceanogr., 42: 950-960
Heissenberger, A., G.G. Leppard, G.J. Herndl, 1996: Relationship between the intracellular integrity and the morphology of the capsular envelope in attached and free-living marine bacteria. Appl. Environ. Microbiol., 62: 4521-4528 Reprint Version (Acrobat Reader PDF - 1132k)
Müller-Niklas, G., G.J. Herndl, 1996: Dynamics of bacterioplankton during a phytoplankton bloom in the high Arctic waters of the Franz-Joseph Land. Aquat. Microb. Ecol., 11: 111-118
Heissenberger, A., G.G. Leppard, G.J. Herndl, 1996: Ultrastructure of marine snow: II. Microbiological considerations. Mar. Ecol. Prog. Ser., 135: 299-38
Leppard, G.G., A. Heissenberger, G.J. Herndl, 1996: Ultrastructure of marine snow: I. Transmission electron microscopy methodology. Mar. Ecol. Prog. Ser., 135: 289-298
Müller-Niklas, G., M. Agis, G.J. Herndl, 1996: Microscale distribution of bacterioplankton in relation to phytoplankton: results from 100-nl samples. Limnol. Oceanogr., 41: 1577-1582.
Berger, B., B. Hoch, G. Kavka, G.J. Herndl, 1996: Bacterial colonization of suspended solids in the Danube River. Aquat. Microb. Ecol., 10: 37-44 Abstract (opens new window)
Hoch, B., B. Berger, G. Kavka, G.J. Herndl, 1996: Influence of waste water treatment on the microbial ecology of a large, temperate river system - the River Danube. Hydrobiologia, 321: 205-218
Berger, B., B.M. Hoch, G. Kavka, G.J. Herndl, 1995: The bacterial community of the Danube near Vienna: Microbial-ecological parameters as compared with bacteriological water quality parameters and their influencing factors (in German). Wasser Abfallwirtschaft, 47: 282-288
Berger, B., B. Hoch, G. Kavka, G.J. Herndl, 1995: Bacterial metabolism in the River Danube: parameters influencing bacterial production. Freshwater Biol., 34: 601-616
Hoch, B., B. Berger, G. Kavka, G.J. Herndl, 1995: Remineralization of organic matter and degradation of the organic fraction of suspended solids in the Danube River. Aquat. Microb. Ecol., 9: 279-288
Moeseneder, M.M., G.J. Herndl, 1995: Influence of turbulence on bacterial production in the sea. Limnol. Oceanogr., 40: 1466-1473
Müller-Niklas, G., A. Heissenberger, S. Puskaric, G.J. Herndl, 1995: Ultraviolet-B radiation and bacterial metabolism in coastal waters. Aquat. Microb. Ecol., 9: 111-116 Abstract (opens new window)
Schuster, S., G.J. Herndl, 1995: Formation and significance of transparent exopolymeric particles in the northern Adriatic Sea. Mar. Ecol. Prog. Ser., 124: 227-236
Bochdansky, A.B., S. Puskaric, G.J. Herndl, 1995: Influence of zooplankton grazing on free dissolved enzymes in the sea. Mar. Ecol. Prog. Ser., 121: 53-63
Obernosterer, I., G.J. Herndl, 1995: Phytoplankton extracellular release and bacterial growth: dependence on the inorganic N:P ratio. Mar. Ecol. Prog. Ser., 116: 247-257
Heissenberger, A., G.J. Herndl, 1994: Formation of high molecular weight material by free-living marine bacteria. Mar. Ecol. Prog. Ser., 111: 129-135
Müller-Niklas, G., S. Schuster, E. Kaltenböck, G.J. Herndl, 1994: Organic content and bacterial metabolism in amorphous aggregations of the Northern Adriatic Sea. Limnol. Oceanogr., 39: 58-68
Rath, H., G.J. Herndl, 1994: Characteristics and diversity of ß-D-glucosidase (EC 3.2.1.21) activity in marine snow. Appl. Environ. Microbiol., 60: 807-813
Slezak, D., S. Puskaric, G.J. Herndl, 1994: Potential role of acrylic acid in bacterioplankton communities in the sea. Mar. Ecol. Prog. Ser., 105: 191-197
Rath, H., C. Schiller, G.J. Herndl, 1993: Ectoenzymatic activity and bacterial dynamics along a trophic gradient in the Caribbean Sea. Mar. Ecol. Prog. Ser., 102: 89-96
Herndl, G.J., G. Müller-Niklas, J. Frick, 1993: Major role of ultraviolet-B in controlling bacterial growth in marine surface waters. Nature, 361: 717-719
Herndl, G.J., 1992: Marine snow in the Northern Adriatic Sea: possible causes and consequences for a shallow ecosystem. Mar. Microbial Food Webs, 6: 149-172
Müller-Niklas, G. & G.J. Herndl, 1992: Activity of fecal coliform bacteria measured by 4-methylumbelliferyl-beta-D-glucuronide substrate in the northern Adriatic Sea with special reference to marine snow. Mar. Ecol. Prog. Ser., 89: 305-309
Karner, M., D. Fuks, G.J. Herndl, 1992: Bacterial activity along a trophic gradient. Microb. Ecol., 24: 243-257
Bochdansky, A. & G.J. Herndl, 1992: Ecology of amorphous aggregates (marine snow) in the Northern Adriatic Sea: V. Role of fecal pellets in marine snow. Mar. Ecol. Prog. Ser., 89: 297-303
Kaltenböck, E. & G.J. Herndl, 1992: Ecology of amorphous aggregations (marine snow) in the Northern Adriatic Sea: IV. Dissolved nutrients and the autotrophic component associated with marine snow. Mar. Ecol. Prog. Ser., 87: 147-159
Bochdansky, A. & G.J. Herndl, 1992: Ecology of amorphous aggregates (marine snow) in the Northern Adriatic Sea: III. Zooplankton interactions with marine snow. Mar. Ecol. Prog. Ser., 87: 135-146
Peduzzi, P. & G.J. Herndl, 1992: Zooplankton activity fueling the microbial loop: differential growth response of bacteria from oligo- and eutrophic waters. Limnol. Oceanogr., 37: 1087-1092
Karner, M. & G.J. Herndl, 1992: Extracellular enzymatic activity and secondary production in free-living and marine snow associated bacteria. Mar. Biol., 113: 341-347
Faganeli, J. & G.J. Herndl, 1991: Dissolved organic matter in the waters of the Gulf of Trieste (Northern Adriatic). Thal. Jugosl., 23: 51-63
Peduzzi, P. & G.J. Herndl, 1991: Mucus trails in the rocky intertidal: a highly active microenvironment. Mar. Ecol. Prog. Ser., 75: 267-274
Amon, R.M.W. & G.J. Herndl, 1991: Deposit-feeding and sediment: II. Decomposition of fecal pellets of Holothuria tubulosa (Holothuroidea, Echinodermata). P.S.Z.N.I: Mar. Ecol., 12: 175-184
Amon, R.M.W. & G.J. Herndl, 1991: Deposit-feeding and sediment: I. Interrelationships between Holothuria tubulosa (Holothuroidea, Echinodermata) and the sediment microbial community. P.S.Z.N.I: Mar. Ecol., 12: 163-174
Peduzzi, P. & G.J. Herndl, 1991: Decompostion and significance of seagrass leaf litter (Cymodocea nodosa) for the microbial food web in coastal waters (Gulf of Trieste, Northern Adriatic Sea). Mar. Ecol. Prog. Ser., 71: 163-174
Herndl, G.J., 1991: Microbial biomass dynamics along a trophic gradient at the Atlantic Barrier Reef off Belize (Central America). P.S.Z.N.I: Mar. Ecol., 12: 41-51
Herndl, G.J. & P. Peduzzi, 1989: Potential microbial utilization rates of sublittoral gastropod mucus trails. Limnol. Oceanogr., 34: 780-784
Herndl, G.J., P. Peduzzi, N. Fanuko, 1989: Benthic community metabolism and microbial dynamics in the Gulf of Trieste (Northern Adriatic Sea). Mar. Ecol. Prog. Ser., 53: 169-178
Schiller, C. & G.J. Herndl, 1989: Evidence of enhanced microbial activity in the interstitial space of branched corals: possible implications for coral metabolism. Coral Reefs, 7: 179-184
Herndl, G.J., 1988: Ecology of amorphous aggregations (marine snow) in the Northern Adriatic Sea: II. Microbial density and activity in marine snow and its implication to overall pelagic processes. Mar. Ecol. Prog. Ser., 48: 265-275
Herndl, G.J. & P. Peduzzi, 1988: Ecology of amorphous aggregations (marine snow) in the Northern Adriatic Sea: I. General considerations. P.S.Z.N.I: Mar. Ecol., 9: 79-90
Herndl, G.J., J. Faganeli, N. Fanuko, P. Peduzzi, V. Turk, 1987: Role of bacteria in the carbon and nitrogen flow between water-column and sediment in a shallow marine bay (Bay of Piran, Northern Adriatic Sea). P.S.Z.N.I: Mar. Ecol., 8: 221-236
Herndl, G.J. & V. Malacic, 1987: Impact of the pycnocline layer on bacterioplankton: diel and spatial variations in microbial parameters in the stratified water column of the Gulf of Trieste (Northern Adriatic Sea). Mar. Ecol. Prog. Ser., 38: 295-303
Peduzzi, P. & G.J. Herndl, 1986: Role of bacteria in decomposition of faecal pellets egested by the epiphyte-grazing gastropod Gibbula umbilicaris. Mar. Biol., 92: 417-424
Herndl, G.J. & B. Velimirov, 1986: Microheterotrophic utilization of mucus released by the Mediterranean coral Cladocora cespitosa. Mar. Biol., 90: 363-369
Herndl, G.J. & B. Velimirov, 1985: Bacteria in the coelenteron of Anthozoa: control of bacterial density by the coelenteric fluid. J. Exp. Mar. Biol. Ecol., 93: 115-130
Herndl, G.J., B. Velimirov, R.E. Krauss, 1985: Heterotrophic nutrition and control of bacterial density in the coelenteron of the giant sea anemone Stoichactis giganteum. Mar. Ecol. Prog. Ser., 22: 101-105
Herndl, G.J., 1982: The feeding behavior of Actinia equina (Anthozoa) under experimental conditions. Ph.D. thesis, Univ. of Vienna (in German)
Weinbauer, M.G., G.J. Herndl, in press: Virus and heterotrophic microplankton. Encyclopedia of life support systems.
Herndl, G.J., M.G. Weinbauer, 2003: Marine microbial food web structure and function. In: Marine Science Frontiers. Wefer, G. F. Lamy, F. Mantoura [Eds]. Springer, Berlin, 265-277
Herndl, G.J., 2002: Inefficiency and redundancy in ecology? A plea for a non-deterministic view of aquatic food webs at the beginning of the anthropocene. In: The Vienna School of Marine Biology: a tribute to Jörg Ott. M. Bright, P.C. Dworschak, M. Stachowitsch. [Eds.]. Facultas Universitätsverlag, Wien, 101-112
Herndl, G.J., I. Obernosterer, 2002: UV radiation and pelagic bacteria. In: Ecological Studies. Vol 153. UV-radiation and arctic ecosystems. [Ed] D.O. Hessen, Springer Verlag, Berlin, Heidelberg, 245-259
Hoppe, H.-G, C. Arnosti, G.J. Herndl, in press: Ecological significance of bacterial enzymes in the marine environment. In: Enzymes in the environment: activity, ecology, and applications. [Eds] R.G. Burns, R.P. Dick, Marcel Dekker, Inc. New York
Herndl, G.J., M. Moeseneder, J.M. Arrieta, C. Winter, 2000: Heterotrophic bacterioplankton: phylogenetic diversity versus functional stability? In: Microbial loops: integrating microbes into the Mediterranean marine environments. CIESM Workshop Series Nr 11, CIESM Monaco, 31-34
Herndl, G.J., 2000: Interactions of bacteria and dissolved organic matter at the sea surface microlayer. Role of the sea surface microlayer processes in the biogeochemistry of the Mediterranean Sea. CIESM Workshop Series Nr 9, CIESM, Monaco, 45-46
Herndl, G.J., 1997: Role of ultraviolet radiation on bacterioplankton activity. In: Effects of Ozone Depletion on Aquatic Ecosystems. [Ed] D.-P. Häder, Academic Press, 143-154
Herndl, G.J., A. Brugger, S. Hager, E. Kaiser, I. Obernosterer, B. Reitner, D. Slezak, 1997: Role of ultraviolet-B radiation on bacteriolankton and the availability of dissolved organic matter. In: UV-B and biosphere. [Eds.] J. Rozema, W.W.C. Gieskes, S.C. van de Geijn, C. Nolan, H. de Boois. Kluwer, Academic Press. Plant Ecology 128: 42-51
Herndl, G.J., 1996: Ultraviolet-radiation and bacterioplankton (in German). Biologie in unserer Zeit. Vol 26: 234-239
Karentz, D., M.L. Bothwell, R.B. Coffin, A. Hanson, G.J. Herndl, S.S. Kilham, M.P. Lesser, M. Lindell, R.E. Moeller, D.P. Morris, P.J. Neale, R.W. Sanders, C.S. Weiler, R.G. Wetzel, 1994: Impact of UVB Radiation on Pelagic Freshwater Ecosystems: Report of Working Group on Bacteria and Phytoplankton. Arch. Hydrobiol. Beih., 43: 31-69
Herndl, G.J., E. Kaltenböck, G. Müller-Niklas, 1993: Dialysis bag incubation as a non-radiolabeling technique to estimate bacterial production. In: Handbook of Methods in Aquatic Microbial Ecology (P.F. Kemp, B.F. Sherr, E.B. Sherr, J.J. Cole, eds.), Lewis Publishers, New York: 553-556
Herndl, G.J., J.M. Arrieta, E. Kaiser, I. Obernosterer, C. Pausz, B. Reitner, 2000: Role of ultraviolet radiation in aquatic systems: interaction between mixing processes, photochemistry and microbial activity. In: Proc. 8th International Symposium on Microbial Ecology, Halifax, Canada. p. 209-216
Herndl, G.J., 1999: Ultraviolet radiation and the transformation of dissolved organic matter by bacterioplankton in the sea. Ecosystems Research Report No 32, The Adriatic Sea, EU/Environment Series, (eds.) T.S. Hopkins, A. Artegiani, G. Cauwet, D. Degobbis, A. Malej, Brussels: 309-318
Herndl, G.J., J.M. Arrieta, K. Stoderegger, 1999: Interaction between specific hydrological and microbial activity leading to extensive mucilage formation in the northern Adriatic Sea. Annali dell "Istituto Superio di Sanita", 35: 405-409
Herndl, G.J., J.M. Arrieta, I. Obernosterer, B. Reitner, 1998: Role of ultraviolet radiation in the Mediterranean Sea: interaction between mixing processes, photochemistry and microbial activity.-Rapp. Comm. int. Mer Medit., 35: 24-28
Iriberri, J., B. Ayo, A. Bianchi, G.J. Herndl, M. Unanue, 1998: Bacterial heterotrophic activity in the Northwestern basin of the Mediterranean sea. Proc. MAST Conference, Irakleon
Kavka, G.G., B. Berger, B.M. Hoch, G.J. Herndl, 1996: Assessment of microbiological water quality in the Austrian part of the Danube River. Arch. Hydrobiol. Suppl. Larger Rivers, 113: 79-86.
Iriberri, J., G.J. Herndl, 1995: Formation and microbial utilization of amorphous aggregates in the sea: ecological significance. Microbiologia SEM, 11: 309-322
Herndl, G.J., 1995: Microbial dynamics in marine aggregates. Proc. Symp. Seasonal dynamics of planktonic ecosystems and sedimentation in coastal Nordic waters. S. Floderus, A.-S. Heiskanen, M. Olesen, P. Wassmann (Eds.) NurmiPrint Oy. pp. 81-105
Decho, A.W., G.J. Herndl, 1995: Microbial activities and the transformation of organic matter within mucilaginous material. Proc. Mucilage Workshop, Censenatico (Italy). Science of the Total Environment 165: 33-42
Ott, J.A., G.J. Herndl, 1994: Marine snow, mucus aggregates and bottom anoxias: Consequences for benthic-pelagic coupling. CIESM Science Series no. 1. Mediterranean Tributary Seas: 133-147
Herndl, G.J., A.B Bochdansky, E. Kaltenböck, G.Müller-Niklas, 1993: Appearance of marine snow and gel-like aggregations in the Northern Adriatic Sea in 1991: a case study. Proc. of Mediambiente, Palermo, 1992
Herndl, G.J., A.B. Bochdansky, E. Kaltenböck, G. Müller-Niklas, 1993: Marine snow in the Northern Adriatic Sea: major role of microbes in the metabolism of marine snow. Proceedings of the XXIII Congress of the Italian Marine Biology Society. OEBALIA, SIBM 1: 1-12
Herndl, G.J., M. Karner, P. Peduzzi, 1992: Floating mucilage in the Northern Adriatic Sea: the potential of a microbial ecological approach to solve the "mystery". Proc. on the First Symp. on Coastal Marine Eutrophication. Total Sci. Environ. Suppl. 1992: 525-538
Faganeli, J., J. Pezdic, B. Ogorelec, G.J. Herndl, T. Dolenec, 1991: The role of sedimentary biogeochemistry in the formation of hypoxia in shallow coastal waters (Gulf of Trieste, northern Adriatic). In: Modern and Ancient Continental Shelf Anoxia. (R.V. Tyson & T.H. Pearson, eds.), Geol. Soc. Special Publication No 58: 107-117
Faganeli, J. & G.J. Herndl, 1991: Behaviour of dissolved organic matter in porewaters of near-shore marine sediments. In: Diversity of Environmental Biogeochemistry (J. Berthelin, ed.), Elsevier, Amsterdam: 157-170
Peduzzi, P. & G.J. Herndl, 1991: Giant marine amorphous aggregations in the Northern Adriatic Sea. In: Diversity of Environmental Biogeochemistry (J. Berthelin, ed.), Elsevier, Amsterdam: 185-192
Herndl, G.J., 1990: Marine snow and its effect on the ecosystem of the Northern Adriatic Sea. Proc. Symp. on Northern Adriatic, Graz: C1-C4
Herndl, G.J., J. Faganeli, N. Fanuko, P. Peduzzi, V. Turk, 1989: Nutrient dynamics between sediment and overlying water in the Bay of Piran (Northern Adriatic Sea). Proc. 21st European Marine Biology Symp., Gdansk: 297-308
Schiller, C. & G.J. Herndl, 1989: Evidence of nutrient remineralization in the interstitial space of hermatypic corals. Proc. 21st European Marine Biology Symp., Gdansk: 455-462
Herndl, G.J., 1989: Diel and spatial variations in bacterial density, FDC, and dissolved organic carbon in a stratified water column of the Gulf of Trieste. In: Aspects in marine microbiology (E.B.G. Jones & D. Miller, eds.), Prog. Oceanog. 21: 139-146
Velimirov, B., G.J. Herndl, G. Kavka, 1986: Biomass distribution and physiological capabilities of bacteria in the water column above a seagrass system. In: Deuxieme Colloque Int. de Bacteriologie Marine (GERBAM ed.), IFREMER, Brest: 129-136
Herndl, G.J. & B. Velimirov, 1986: Role of bacteria in the gastral cavity of Anthozoa. In: Deuxieme Colloque Int. de Bacteriologie Marine (GERBAM ed.), IFREMER, Brest: 407-414