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Baltar, F., Lundin, D., Palovaara, J., Lekunberri, I., Reinthaler, T., Herndl, G. J. and Pinhassi J. 2016. Prokaryotic responses to ammonium and organic carbon reveal alternative CO2 fixation pathways and importance of alkaline phosphatase in the mesopelagic North Atlantic. Front. Microbiol. 7, 788–19. DOI:10.3389/fmicb.2016.01670.
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Frank, A.H., Pontiller, B., Herndl, G.J., Reinthaler, T., 2016. Erythromycin and GC7 fail as domain-specific inhibitors for bacterial and archaeal activity in the open ocean. Aquat Microb Ecol 77 (2), 99–110.
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Lřnborg, C., Cuevas, L.A., Reinthaler, T., Herndl, G.J., Gasol, J.M., Morán, X.A.G., Bates N.R. and Álvarez-Salgado, X. A. 2016. Depth dependent relationships between temperature and ocean heterotrophic prokaryotic production. Front. Mar. Sci. DOI: 10.3389/fmars.2016.00090
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Frank, A., Garcia, J.A., Herndl, G.J. and Reinthaler, T. 2016. Connectivity between surface and deep waters determines prokaryotic diversity in the North Atlantic Deep Water. Environ. Microbiol. DOI: 10.1111/1462-2920.13237
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Reinthaler, T., X. A. Álvarez Salgado, M. Álvarez, H. M. van Aken, G. J. Herndl. 2013. Impact of water mass mixing on the biogeochemistry and microbiology of the Northeast Atlantic Deep Water. Global Biogeochem. CyclesDOI: 10.1002/2013GB004634
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Herndl, G.J., Reinthaler, T., 2013. Microbial control of the dark end of the biological pump. Nature Geoscience 6 (9), 718–724.
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Baltar, F., Reinthaler, T., Herndl, G.J., Pinhassi, J., 2013. Major Effect of Hydrogen Peroxide on Bacterioplankton Metabolism in the Northeast Atlantic. Plos One 8 (4), doi:10.1371/journal.pone.0061051.
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De Corte, D., Sintes, E., Yokokawa, T., Reinthaler, T., Herndl, G.J., 2012. Links between viruses and prokaryotes throughout the water column along a North Atlantic latitudinal transect. ISME Journal 6 (8), 1566–1577.
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Swan, B.K., Martinez-Garcia, M., Preston, C.M., Sczyrba, A., Woyke, T., Lamy, D., Reinthaler, T., Poulton, N.J., Masland, E.D.P., Gomez, M.L., Sieracki, M.E., DeLong, E.F., Herndl, G.J., Stepanauskas, R., 2011. Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean. Science: 333, 1296–1300.
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Varela, M.M., van Aken, H.M., Sintes, E., Reinthaler, T., Herndl, G.J., 2011. Contribution of Crenarchaeota and Bacteria to autotrophy in the North Atlantic interior. Environmental Microbiology: 13, 1524–1533.
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De Corte, D., E. Sintes, C. Winter, T. Yokokawa, T. Reinthaler, G. J. Herndl. 2010. Links between viral and prokaryotic communities throughout the water column in the (sub)tropical Atlantic Ocean. ISME Journal: 4, 1431–1442.
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Baltar, F., J. Aristegui, E. Sintes, J. M. Gasol, T. Reinthaler, G. J. Herndl. 2010. Significance of non-sinking particulate organic carbon and dark CO2 fixation to heterotrophic carbon demand in the mesopelagic northeast Atlantic. Geophysical Research Letters 37, doi:10.1029/2010GL043105.
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Burd, A.B., D. A. Hansell, D. K. Steinberg, T. R. Anderson, J. ArÌstegui, F. Baltar, S. R. Beaupré, K. O. Buesseler, F. DeHairs, G. A. Jackson, D. C. Kadko, R. Koppelmann, R. S. Lampitt, T. Nagata, T. Reinthaler, C. Robinson, B. H. Robison, C. Tamburini, T. Tanaka. 2010. Assessing the apparent imbalance between geochemical and biochemical indicators of meso- and bathypelagic biological activity: What the @$#! is wrong with present calculations of carbon budgets? Deep Sea Res. II: 57:1557-1571.
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Nagata, T., C. Tamburini, J. ArÌstegui, F. Baltar, A. B. Bochdansky, S. Fonda-Umani, H. Fukuda, A. Gogou, D. A. Hansell, R. L Hansman, G. J. Herndl, C. Panagiotopoulos, T. Reinthaler, R. Sohrin, P. Verdugo, N. Yamada, Y. Yamashita, T. Yokokawa, D. H. Bartlett. 2010. Emerging concepts on microbial processes in the bathypelagic ocean – ecology, biogeochemistry, and genomics. Deep Sea Res. II: 57:1519-1536.
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Reinthaler, T., H. M van Aken, G. J. Herndl. 2010. Major contribution of autotrophy to microbial carbon cycling in the deep North Atlantic's interior. Deep Sea Res. II:57:1572-1580.
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Herndl G. J., H. Agogué, F. Baltar, T. Reinthaler, E. Sintes, and M. M. Varela. 2008. Regulation of aquatic microbial processes: the ‘microbial loop’ of the sunlit surface waters and the dark ocean dissected. Aquat. Microb. Ecol. 53: 59-68.
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Gasol J. M., J. Pinhassi, L. Alonso-Sáez, H. Ducklow, G. J. Herndl, M. Koblížek, M. Labrenz, Y. Luo, X. A. G. Morán, T. Reinthaler, and M. Simon. 2008. Towards a better understanding of the microbial carbon flux in the sea. Aquat. Microb. Ecol. 53: 21-38.
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Wängberg, S.-Ĺ., K. I. M. Andreasson, K. Gustavson, T. Reinthaler and P. Hendriksen. 2008. UVB effects on microplankton communities in Kongsfjord, Svalbard - A mesocosm experiment. J. Exp. Mar. Biol. Ecol. 365: 156-163
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Reinthaler, T., E. Sintes, and G. J. Herndl. 2008. Dissolved organic matter and bacterial production and respiration in the sea-surface microlayer of the open Atlantic and the western Mediterranean Sea. Limnol. Oceanogr. 53: 122-136.
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Wilhartitz, I., Mach, R. L., Teira, E., Reinthaler, T., Herndl, G. J., and A. H. Farnleitner. 2007. Prokaryotic community analysis with CARD-FISH in comparison with FISH in ultra-oligotrophic ground- and drinking water. J. Appl. Microbiol. 103: 871-881
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Reinthaler, T., K. Bakker, R. Manuels, J. Van Ooijen, and G. J. Herndl. 2006. Fully automated spectrophotometric approach to determine oxygen concentrations in seawater via continuous-flow analysis. Limnol. Oceanogr.: Methods 4: 358-366.
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Reinthaler, T., H. van Aken, C. Veth, J. Arístegui, C. Robinson, P. J. le B. Williams, P. Lebaron, and G. J. Herndl. 2006. Prokaryotic respiration and production in the meso- and bathypelagic realm of the eastern and western North Atlantic basin. Limnol. Oceanogr. 51: 1262-1273.
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Wängberg, S.-Å., K. I. M. Andreasson, K. Garde, K. Gustavson, P. Henriksen and T. Reinthaler. 2006. Inhibition of primary production by UV-B radiation in an Arctic bay - model calculations. Aquat. Sci. 68: 117-128.
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Joux, F., H. Agogue, I. Obernosterer, C. Dupuy, T. Reinthaler, G. J. Herndl, and P. Lebaron. 2006. Microbial community structure in the sea surface microlayer at two contrasting coastal sites in the northwestern Mediterranean Sea. Aqua. Microb. Ecol. 42:91-104.
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Reinthaler, T., and G. J. Herndl. 2005. Seasonal dynamics of bacterial growth efficiencies in relation to phytoplankton in the southern North Sea. Aquat. Microb. Ecol. 39:7-16.
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Reinthaler, T., C. Winter, and G. J. Herndl. 2005. Relationship between bacterioplankton richness, respiration, and production in the southern North Sea. Appl. Environ. Microbiol. 71:2260-2266.
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Herndl, G. J., T. Reinthaler, E. Teira, H. van Aken, C. Veth, A. Pernthaler, and J. Pernthaler. 2005. Contribution of archaea to total prokaryotic production in the deep Atlantic ocean. Appl. Environ. Microbiol. 71:2303-2309.
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Obernosterer, I., P. Catala, T. Reinthaler, G. J. Herndl, and P. Lebaron. 2005. Enhanced heterotorophic activity in the surface microlayer of the Mediterranean Sea. Aquat. Microb. Ecol. 39:1616-1564.
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Teira, E., T. Reinthaler, A. Pernthaler, J. Pernthaler, and G. J. Herndl. 2004. Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and archaea in the deep ocean. Appl. Environ. Microbiol. 70:4411-4414.
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Agogué, H., E. O. Casamayor, F. Joux, I. Obernosterer, C. Dupuy, P. Catala, M. G. Weinbauer, T. Reinthaler, G. J. Herndl, and P. Lebaron. 2004. Comparison of samplers for the biological characterization of the sea surface microlayer. Limnol. Oceanogr.: Methods 2:213-225.
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