Publications
Fadeev E, Hennenfeind JH, Amano C, Zhao Z, Klun K, Herndl GJ et al. Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter. mSystems. 2024 Feb 20;9(2):e01264-23. Epub 2024 Jan 23. doi: 10.1128/msystems.01264-23
Salazar-Alekseyeva K, Herndl GJ, Baltar F. Influence of Salinity on the Extracellular Enzymatic Activities of Marine Pelagic Fungi. Journal of Fungi. 2024 Feb 13;10(2):152. doi: 10.3390/jof10020152
Orel N, Fadeev E, Herndl GJ, Turk V, Tinta T. Recovering high-quality bacterial genomes from cross-contaminated cultures: a case study of marine Vibrio campbellii. BMC Genomics. 2024 Feb 6;25(1):146. doi: 10.1186/s12864-024-10062-2
Masdeu-Navarro M, Mangot JF, Xue L, Cabrera-Brufau M, Kieber DJ, Rodríguez-Ros P et al. Diel variation of seawater volatile organic compounds, DMSP-related compounds, and microbial plankton inside and outside a tropical coral reef ecosystem. Frontiers in Marine Science . 2024;11:1341619. doi: 10.3389/fmars.2024.1341619
Tang W, Ward BB, Beman M, Bristow L, Clark D, Fawcett S et al. Database of nitrification and nitrifiers in the global ocean. Earth System Science Data. 2023 Nov 16;15(11):5036-5077. doi: 10.5194/essd-15-5039-2023
Srivastava A, De Corte D, Garcia JAL, Swan BK, Stepanauskas R, Herndl GJ et al. Interplay between autotrophic and heterotrophic prokaryotic metabolism in the bathypelagic realm revealed by metatranscriptomic analyses. Microbiome. 2023 Nov 4;11(1):239. doi: 10.1186/s40168-023-01688-7
Debeljak P, Bayer B, Sun Y, Herndl GJ, Obernosterer I. Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean. Microbiome. 2023 Aug 19;11(1):187. doi: 10.1186/s40168-023-01600-3
Tinta T, Zhao Z, Bayer B, Herndl GJ. Jellyfish detritus supports niche partitioning and metabolic interactions among pelagic marine bacteria. Microbiome. 2023 Jul 21;11(1):156. doi: 10.1186/s40168-023-01598-8
Baltar F, Martínez-Pérez C, Amano C, Vial M, Robaina-Estévez S, Reinthaler T et al. A ubiquitous gammaproteobacterial clade dominates expression of sulfur oxidation genes across the mesopelagic ocean. Nature Microbiology. 2023 Jun;8(6):1137-1148. Epub 2023 Apr 24. doi: 10.1038/s41564-023-01374-2
Heitger M, Baltar F. Respiration, Production, and Growth Efficiency of Marine Pelagic Fungal Isolates. Journal of Fungi. 2023 Apr;9(4):417. doi: 10.3390/jof9040417
Herndl GJ, Bayer B, Baltar F, Reinthaler T. Prokaryotic Life in the Deep Ocean's Water Column. Annual review of marine science. 2023 Jan;15:461-483. 1. Epub 2022 Jul 14. doi: 10.1146/annurev-marine-032122-115655
Fadeev E, Carpaneto Bastos C, Hennenfeind JH, Biller SJ, Sher D, Wietz M et al. Characterization of membrane vesicles in
Alteromonas macleodii indicates potential roles in their copiotrophic lifestyle. Microlife. 2023;4:uqac025. doi: 10.1093/femsml/uqac025
Salazar-Alekseyeva K, Herndl GJ, Baltar F. Release of cell-free enzymes by marine pelagic fungal strains. Frontiers in Fungal Biology. 2023;4:1209265. doi: 10.3389/ffunb.2023.1209265
Munson-McGee JH, Lindsay MR, Sintes E, Brown JM, D'Angelo T, Brown J et al. Decoupling of respiration rates and abundance in marine prokaryoplankton. Nature. 2022 Dec 22;612(7941):764-770. Epub 2022. doi: 10.1038/s41586-022-05505-3
Amano C, Reinthaler T, Sintes E, Varela MM, Stefanschitz J, Kaneko S et al. A device for assessing microbial activity under ambient hydrostatic pressure: The in situ microbial incubator (ISMI). Limnology and Oceanography: Methods. 2022 Dec 14;21(2):69-81. doi: 10.1002/lom3.10528
Amano C, Zhao Z, Sintes E, Reinthaler T, Stefanschitz J, Kisadur M et al. Limited carbon cycling due to high-pressure effects on the deep-sea microbiome. Nature Geoscience. 2022 Dec;15(12):1041-1047. doi: 10.1038/s41561-022-01081-3
Korlević M, Markovski M, Herndl GJ, Najdek M. Temporal variation in the prokaryotic community of a nearshore marine environment. Scientific Reports. 2022 Oct 7;12(1):16859. doi: 10.1038/s41598-022-20954-6
Conte MH, Pedrosa Pàmies R, Honda M, Herndl GJ. Editorial: The oceanic particle flux and its cycling within the deep water column. Frontiers in Earth Science. 2022 Sept 9;10:1020065. doi: 10.3389/feart.2022.1020065
Markovski M, Najdek M, Herndl GJ, Korlevic M. Compositional stability of sediment microbial communities during a seagrass meadow decline. Frontiers in Marine Science . 2022 Sept 5;9:966070. doi: 10.3389/fmars.2022.966070
Breyer E, Zhao Z, Herndl GJ, Baltar F. Global contribution of pelagic fungi to protein degradation in the ocean. Microbiome. 2022 Sept 1;10(1):143. doi: 10.1186/s40168-022-01329-5